Pseudomonas protegens Pf-5, PFL_2508

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006882 cellular zinc ion homeostasis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006829 zinc ion transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005385 zinc ion transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR45755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006812 cation transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008324 cation transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.1510.10 Cation efflux protein transmembrane domain IPR027469 Cation efflux transmembrane domain superfamily 24 258 2.3E-42
MobiDBLite mobidb-lite consensus disorder prediction - - 156 195 -
NCBIfam NF033827 NCBIFAM: CDF family Co(II)/Ni(II) efflux transporter DmeF - - 12 329 0.0
MobiDBLite mobidb-lite consensus disorder prediction - - 170 194 -
NCBIfam TIGR01297 JCVI: cation diffusion facilitator family transporter IPR002524 Cation efflux protein 25 312 9.4E-64
Pfam PF01545 Cation efflux family IPR002524 Cation efflux protein 31 259 1.6E-32
PANTHER PTHR45755 - IPR045316 Zinc transporter Msc2-like 22 318 3.5E-56
SUPERFAMILY SSF161111 Cation efflux protein transmembrane domain-like IPR027469 Cation efflux transmembrane domain superfamily 22 260 5.36E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.