Pseudomonas protegens Pf-5, PFL_2547

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.1060.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07992
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl00410 beta-Alanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00770 Pantothenate and CoA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46548 alpha-helical ferredoxin - - 6 151 1.2E-28
PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature - - 374 395 4.0E-11
PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature - - 411 429 4.0E-11
Gene3D G3DSA:1.10.1060.10 - IPR009051 Alpha-helical ferredoxin 9 138 5.0E-32
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase IPR023753 FAD/NAD(P)-binding domain 141 437 2.0E-32
PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature - - 142 164 4.0E-11
Gene3D G3DSA:3.50.50.60 - IPR036188 FAD/NAD(P)-binding domain superfamily 273 455 2.4E-24
PANTHER PTHR43073 DIHYDROPYRIMIDINE DEHYDROGENASE [NADP(+)] - - 18 449 3.8E-70
PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature - - 272 296 4.0E-11
Coils Coil Coil - - 445 455 -
SUPERFAMILY SSF51971 Nucleotide-binding domain - - 139 381 4.71E-50
Gene3D G3DSA:3.50.50.60 - IPR036188 FAD/NAD(P)-binding domain superfamily 139 257 3.0E-27
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 372 388 2.4E-19
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IPR028261 Dihydroprymidine dehydrogenase domain II 20 127 5.9E-33
SUPERFAMILY SSF51971 Nucleotide-binding domain - - 327 448 7.42E-10
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 401 423 2.4E-19
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 143 162 2.4E-19
PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature - - 276 294 2.4E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.