Pseudomonas protegens Pf-5, PFL_3004

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl03070	Bacterial secretion system	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:3.55.50.10:FF:000001	Actin cross-linking toxin VgrG1	-	-	98	189	5.9E-43
Gene3D	G3DSA:2.30.110.50	-	-	-	15	333	0.0
Pfam	PF06715	Gp5 C-terminal repeat (3 copies)	IPR010609	Gp5, C-terminal	530	552	1.1E-4
Pfam	PF05954	Phage tail baseplate hub (GPD)	-	-	29	329	9.3E-103
NCBIfam	TIGR03361	JCVI: type VI secretion system tip protein TssI/VgrG N-terminal domain	IPR017847	Type VI secretion system, RhsGE-associated Vgr family subset	11	523	0.0
NCBIfam	TIGR01646	JCVI: type VI secretion system tip protein VgrG	IPR006533	Type VI secretion system, RhsGE-associated Vgr protein	23	506	0.0
SUPERFAMILY	SSF69279	Phage tail proteins	-	-	190	363	1.26E-35
SUPERFAMILY	SSF69349	Phage fibre proteins	-	-	591	731	5.57E-16
PANTHER	PTHR32305	-	-	-	13	663	2.9E-92
Gene3D	G3DSA:4.10.220.110	-	-	-	224	286	0.0
Gene3D	G3DSA:3.55.50.10	-	-	-	98	189	0.0
Gene3D	G3DSA:2.40.50.230	-	IPR037026	Vgr protein, OB-fold domain superfamily	355	457	7.9E-44
Pfam	PF04717	Type VI secretion system/phage-baseplate injector OB domain	IPR006531	Gp5/Type VI secretion system Vgr protein, OB-fold domain	386	453	3.3E-13
SUPERFAMILY	SSF69255	gp5 N-terminal domain-like	-	-	365	452	3.66E-34
SUPERFAMILY	SSF69279	Phage tail proteins	-	-	11	184	2.81E-63
FunFam	G3DSA:2.40.50.230:FF:000001	Type VI secretion protein VgrG	-	-	355	457	1.2E-59
SUPERFAMILY	SSF69349	Phage fibre proteins	-	-	442	607	4.63E-47

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.