Pseudomonas protegens Pf-5, PFL_3749

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008237 metallopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008233 peptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00232
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF14464 Prokaryotic homologs of the JAB domain IPR028090 JAB domain, prokaryotic 4 99 5.1E-20
CDD cd08073 MPN_NLPC_P60 - - 8 108 4.23105E-54
SUPERFAMILY SSF102712 JAB1/MPN domain - - 2 103 1.44E-20
Pfam PF00877 NlpC/P60 family IPR000064 Endopeptidase, NLPC/P60 domain 125 250 7.4E-11
PANTHER PTHR34858 CYSO-CYSTEINE PEPTIDASE - - 2 177 2.5E-33
Gene3D G3DSA:3.90.1720.10 endopeptidase domain like (from Nostoc punctiforme) - - 118 253 1.7E-7
SUPERFAMILY SSF54001 Cysteine proteinases IPR038765 Papain-like cysteine peptidase superfamily 117 252 4.61E-12
SMART SM00232 pad1_6 IPR000555 JAB1/MPN/MOV34 metalloenzyme domain 1 121 2.0E-6
Gene3D G3DSA:3.40.140.10 Cytidine Deaminase, domain 2 - - 1 113 2.6E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.