Pseudomonas protegens Pf-5, PFL_4614

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0140359 ABC-type transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03301
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43875
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008643 carbohydrate transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd03301
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43875
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00005
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like, ATP-binding domain 21 163 1.3E-31
Pfam PF03459 TOBE domain IPR005116 Transport-associated OB, type 1 303 355 1.9E-9
FunFam G3DSA:3.40.50.300:FF:000042 Maltose/maltodextrin ABC transporter, ATP-binding protein - - 1 240 1.7E-113
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 304 348 9.9E-20
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 240 3.2E-75
Pfam PF17912 MalK OB fold domain IPR040582 MalK-like, OB fold domain 237 291 7.5E-13
CDD cd03301 ABC_MalK_N IPR015855 ABC transporter, maltose/maltodextrin import, MalK-like 4 218 8.91994E-126
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 4 245 8.82E-85
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 30 221 3.3E-14
Gene3D G3DSA:2.40.50.100 - - - 241 362 9.9E-20
SUPERFAMILY SSF50331 MOP-like IPR008995 Molybdate/tungstate binding, C-terminal 238 365 2.24E-28
PANTHER PTHR43875 MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX IPR047641 ABC transporter, ATP-binding protein MalK/UgpC-like 1 364 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.