Pseudomonas protegens Pf-5, PFL_5385

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0046565 3-dehydroshikimate dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0046279 3,4-dihydroxybenzoate biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00350 Tyrosine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00360 Phenylalanine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfl00130 Ubiquinone and other terpenoid-quinone biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07250 HPPD_C_like IPR041735 4-hydroxyphenylpyruvate dioxygenase, C-terminal 439 625 7.37542E-67
Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain 441 564 1.7E-10
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 291 437 1.3E-42
SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 315 622 7.34E-64
Hamap MF_02238 3-dehydroshikimate dehydratase. IPR043700 3-dehydroshikimate dehydratase 1 628 45.830784
Pfam PF01261 Xylose isomerase-like TIM barrel IPR013022 Xylose isomerase-like, TIM barrel domain 18 262 5.3E-42
Gene3D G3DSA:3.10.180.10 - IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 438 633 1.3E-47
PANTHER PTHR12110 HYDROXYPYRUVATE ISOMERASE - - 1 336 2.3E-94
CDD cd08342 HPPD_N_like IPR041736 4-hydroxyphenylpyruvate dioxygenase, N-terminal 297 429 4.69241E-30
Gene3D G3DSA:3.20.20.150 - - - 1 268 3.2E-69
Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal - - 296 428 7.4E-36
SUPERFAMILY SSF51658 Xylose isomerase-like IPR036237 Xylose isomerase-like superfamily 1 268 8.98E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.