Pseudomonas protegens Pf-5, PFL_5662 (dnaG)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.90.580.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006269	DNA replication, synthesis of RNA primer	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF002811	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016779	nucleotidyltransferase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF10410	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.90.580.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003896	DNA primase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF002811	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PIRSF002811	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pfl03030	DNA replication	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:3.90.980.10:FF:000001	DNA primase	-	-	111	243	5.1E-49
Pfam	PF13662	Toprim domain	IPR006171	TOPRIM domain	262	330	3.7E-17
Gene3D	G3DSA:3.90.580.10	-	IPR036977	DNA Primase, CHC2-type zinc finger	2	102	2.2E-36
CDD	cd03364	TOPRIM_DnaG_primases	IPR034151	Bacterial DnaG primase, TOPRIM domain	262	343	7.26016E-36
FunFam	G3DSA:3.40.1360.10:FF:000002	DNA primase	-	-	244	371	1.4E-52
Gene3D	G3DSA:1.20.50.20	DnaG, RNA polymerase domain, helical bundle	-	-	372	429	3.3E-21
SUPERFAMILY	SSF56731	DNA primase core	-	-	117	428	1.65E-109
Pfam	PF01807	CHC2 zinc finger	IPR002694	Zinc finger, CHC2-type	6	100	1.7E-40
PANTHER	PTHR30313	DNA PRIMASE	-	-	1	643	0.0
Pfam	PF08275	DNA primase catalytic core, N-terminal domain	IPR013264	DNA primase, catalytic core, N-terminal	127	254	2.0E-43
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	479	505	-
Gene3D	G3DSA:3.40.1360.10	-	-	-	244	371	6.0E-41
SUPERFAMILY	SSF57783	Zinc beta-ribbon	-	-	4	101	4.93E-38
Gene3D	G3DSA:1.10.860.10	DNAb Helicase; Chain A	IPR016136	DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal	509	650	1.5E-34
SMART	SM00400	primzinc3	IPR002694	Zinc finger, CHC2-type	36	90	3.3E-34
SUPERFAMILY	SSF117023	DNA primase DnaG, C-terminal domain	-	-	518	645	5.62E-32
Hamap	MF_00974	DNA primase [dnaG].	IPR030846	DNA primase DnaG, bacteria	4	644	30.073755
Gene3D	G3DSA:3.90.980.10	-	IPR037068	DNA primase, catalytic core, N-terminal domain superfamily	114	243	8.2E-49
NCBIfam	TIGR01391	JCVI: DNA primase	IPR006295	DNA primase, DnaG	5	421	0.0
PIRSF	PIRSF002811	DnaG	IPR030846	DNA primase DnaG, bacteria	2	651	0.0
FunFam	G3DSA:3.90.580.10:FF:000001	DNA primase	-	-	1	101	6.2E-42
Pfam	PF08278	DNA primase DnaG DnaB-binding	IPR013173	DNA primase DnaG, DnaB-binding domain	521	642	5.9E-25
Pfam	PF10410	DnaB-helicase binding domain of primase	IPR019475	DNA primase, DnaB-helicase binding domain	374	426	4.9E-11
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	95	116	-
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	466	515	-
SMART	SM00766	dnag_dnab_bind_seq8d	IPR013173	DNA primase DnaG, DnaB-binding domain	517	643	2.4E-34
SMART	SM00493	toprim5	IPR006171	TOPRIM domain	262	333	4.1E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.