Pseudomonas protegens CHA0, PFLCHA0_c00020 (dnaN)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:cd00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003887	DNA-directed DNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02767	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0008408	3'-5' exonuclease activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02767	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006260	DNA replication	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02767	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0009360	DNA polymerase III complex	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02767	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pprc00230	Purine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pprc00240	Pyrimidine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pprc01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pprc03440	Homologous recombination	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pprc03430	Mismatch repair	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pprc03030	DNA replication	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF02767	DNA polymerase III beta subunit, central domain	IPR022637	DNA polymerase III, beta sliding clamp, central	129	244	7.7E-40
Gene3D	G3DSA:3.10.150.10	DNA Polymerase III, subunit A, domain 2	-	-	249	367	4.0E-34
PANTHER	PTHR30478	DNA POLYMERASE III SUBUNIT BETA	IPR001001	DNA polymerase III, beta sliding clamp	1	367	3.7E-130
FunFam	G3DSA:3.10.150.10:FF:000001	Beta sliding clamp	-	-	1	123	1.4E-55
SUPERFAMILY	SSF55979	DNA clamp	IPR046938	DNA clamp superfamily	1	120	3.59E-30
CDD	cd00140	beta_clamp	IPR001001	DNA polymerase III, beta sliding clamp	1	366	0.0
Gene3D	G3DSA:3.10.150.10	DNA Polymerase III, subunit A, domain 2	-	-	1	123	1.5E-49
Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	IPR022634	DNA polymerase III, beta sliding clamp, N-terminal	1	119	2.8E-43
PIRSF	PIRSF000804	DNA_pol_III_b	IPR001001	DNA polymerase III, beta sliding clamp	1	367	3.6E-124
SUPERFAMILY	SSF55979	DNA clamp	IPR046938	DNA clamp superfamily	246	367	1.69E-37
Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	IPR022635	DNA polymerase III, beta sliding clamp, C-terminal	247	366	3.7E-41
SUPERFAMILY	SSF55979	DNA clamp	IPR046938	DNA clamp superfamily	129	245	6.28E-29
SMART	SM00480	pol35	IPR001001	DNA polymerase III, beta sliding clamp	17	363	0.0
NCBIfam	TIGR00663	JCVI: DNA polymerase III subunit beta	IPR001001	DNA polymerase III, beta sliding clamp	1	367	2.4E-109
Gene3D	G3DSA:3.10.150.10	DNA Polymerase III, subunit A, domain 2	-	-	126	248	3.9E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.