Pseudomonas protegens CHA0, PFLCHA0_c00030 (recF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003697 single-stranded DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00611
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00365 DNA replication and repair protein RecF [recF]. IPR001238 DNA-binding, RecF 1 367 95.364052
NCBIfam TIGR00611 JCVI: DNA replication and repair protein RecF IPR001238 DNA-binding, RecF 1 359 5.9E-116
Pfam PF02463 RecF/RecN/SMC N terminal domain IPR003395 RecF/RecN/SMC, N-terminal 3 357 3.2E-34
PANTHER PTHR32182 DNA REPLICATION AND REPAIR PROTEIN RECF - - 1 360 2.6E-44
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 342 1.54E-34
FunFam G3DSA:1.20.1050.90:FF:000003 DNA replication and repair protein RecF - - 121 299 2.8E-117
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 6 334 3.6E-86
Gene3D G3DSA:1.20.1050.90 - IPR042174 DNA-binding RecF, domain 2 121 299 3.6E-86

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.