Pseudomonas protegens CHA0, PFLCHA0_c12800 (rsuA1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01479
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00165 S4 - - 5 45 1.58478E-7
SUPERFAMILY SSF55174 Alpha-L RNA-binding motif - - 5 49 1.07E-10
CDD cd02555 PSSA_1 - - 60 236 3.40201E-96
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 104 234 8.48E-18
SMART SM00363 s4_6 IPR002942 RNA-binding S4 domain 5 65 4.8E-4
PANTHER PTHR47683 PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED - - 3 233 1.8E-28
Gene3D G3DSA:3.30.2350.10 Pseudouridine synthase - - 67 236 6.2E-20
Gene3D G3DSA:3.10.290.10 - IPR036986 RNA-binding S4 domain superfamily 2 55 1.3E-11
Pfam PF01479 S4 domain IPR002942 RNA-binding S4 domain 15 47 9.7E-7

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.