Pseudomonas protegens CHA0, PFLCHA0_c14310 (dapA1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001365
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc00261 Monobactam biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pprc01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00408 DHDPS-like - - 9 281 1.30562E-93
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 6 292 7.3E-53
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 108 124 1.0E-11
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 133 150 1.0E-11
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 295 2.2E-77
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 5 294 1.9E-87
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 40 61 1.0E-11
PANTHER PTHR42849 N-ACETYLNEURAMINATE LYASE - - 2 294 1.0E-53
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 76 94 1.0E-11
SMART SM01130 DHDPS_2 IPR002220 DapA-like 5 295 4.8E-98
SUPERFAMILY SSF51569 Aldolase - - 2 295 6.38E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.