Pseudomonas protegens CHA0, PFLCHA0_c21960 (pqqE1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01335 Radical_SAM - - 25 184 1.68704E-20
NCBIfam TIGR04085 JCVI: SPASM domain IPR023885 4Fe4S-binding SPASM domain 263 354 8.5E-12
SUPERFAMILY SSF102114 Radical SAM enzymes - - 14 337 1.7E-65
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 21 219 4.6E-4
Pfam PF13186 Iron-sulfur cluster-binding domain IPR023885 4Fe4S-binding SPASM domain 263 327 1.6E-5
Coils Coil Coil - - 356 376 -
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 20 308 3.8E-40
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 26 163 8.7E-18
SFLD SFLDG01386 main SPASM domain-containing - - 17 358 0.0
NCBIfam TIGR03913 JCVI: GDL motif peptide-associated radical SAM/SPASM maturase IPR023820 Radical SAM GDL-associated 3 479 0.0
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 17 346 2.2E-59
SFLD SFLDS00029 Radical SAM IPR007197 Radical SAM 17 358 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.