Pseudomonas protegens CHA0, PFLCHA0_c27270 (siaT)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006066
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pprc02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00786 | JCVI: TRAP transporter large permease subunit | IPR004681 | TRAP transporter large membrane protein DctM | 17 | 421 | 0.0 |
| PIRSF | PIRSF006066 | HI0050 | IPR004681 | TRAP transporter large membrane protein DctM | 1 | 426 | 0.0 |
| PANTHER | PTHR33362 | SIALIC ACID TRAP TRANSPORTER PERMEASE PROTEIN SIAT-RELATED | IPR004681 | TRAP transporter large membrane protein DctM | 1 | 425 | 0.0 |
| Pfam | PF06808 | Tripartite ATP-independent periplasmic transporter, DctM component | IPR010656 | TRAP C4-dicarboxylate transport system permease DctM subunit | 7 | 415 | 1.0E-123 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.