Pseudomonas protegens CHA0, PFLCHA0_c28070 (gspH)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0015627 type II protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12019
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015628 protein secretion by the type II secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12019
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pprc03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 81 101 -
SUPERFAMILY SSF54523 Pili subunits IPR045584 Pilin-like 53 144 2.67E-12
Gene3D G3DSA:3.55.40.10 minor pseudopilin epsh domain - - 82 194 8.8E-8
Pfam PF07963 Prokaryotic N-terminal methylation motif IPR012902 Prokaryotic N-terminal methylation site 49 72 7.4E-10
PRINTS PR00885 Bacterial general secretion pathway protein H signature IPR002416 Type II secretion system protein GspH 63 77 1.1E-5
Pfam PF12019 Type II transport protein GspH IPR022346 General secretion pathway, GspH 88 186 4.1E-6
PRINTS PR00885 Bacterial general secretion pathway protein H signature IPR002416 Type II secretion system protein GspH 48 62 1.1E-5
NCBIfam TIGR02532 JCVI: prepilin-type N-terminal cleavage/methylation domain IPR012902 Prokaryotic N-terminal methylation site 50 72 3.7E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.