Pseudomonas protegens CHA0, PFLCHA0_c46050 (bdlA2)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0007165 | signal transduction |
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pprc02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | pprc02020 | Two-component system | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 18 | 91 | 0.0024 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 153 | 258 | 4.71E-23 |
| SMART | SM00283 | MA_2 | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 229 | 433 | 2.6E-22 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 152 | 254 | 1.21481E-8 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 30 | 132 | 6.11E-24 |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 215 | 257 | 0.076 |
| CDD | cd11386 | MCP_signal | - | - | 255 | 430 | 5.98984E-49 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 153 | 262 | 6.0E-13 |
| Pfam | PF08447 | PAS fold | IPR013655 | PAS fold-3 | 165 | 250 | 3.3E-15 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 23 | 139 | 3.4E-16 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 6 | 126 | 1.2E-19 |
| Gene3D | G3DSA:1.10.287.950 | - | - | - | 249 | 436 | 2.9E-49 |
| Coils | Coil | Coil | - | - | 10 | 30 | - |
| SMART | SM00086 | pac_2 | IPR001610 | PAC motif | 93 | 135 | 0.0053 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 144 | 210 | 33.0 |
| SUPERFAMILY | SSF58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | - | - | 245 | 433 | 1.11E-53 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 127 | 248 | 1.1E-21 |
| Pfam | PF00015 | Methyl-accepting chemotaxis protein (MCP) signalling domain | IPR004089 | Methyl-accepting chemotaxis protein (MCP) signalling domain | 274 | 430 | 5.8E-39 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 30 | 132 | 3.75692E-12 |
| Pfam | PF13426 | PAS domain | IPR000014 | PAS domain | 37 | 133 | 1.7E-12 |
| Coils | Coil | Coil | - | - | 251 | 271 | - |
| PANTHER | PTHR24422 | CHEMOTAXIS PROTEIN METHYLTRANSFERASE | - | - | 17 | 429 | 2.0E-53 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.