Pseudomonas poae RE_1-1-14, H045_08125

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0043565	sequence-specific DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00342	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF01965	DJ-1/PfpI family	IPR002818	DJ-1/PfpI	38	189	2.2E-17
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	276	324	1.39E-8
Gene3D	G3DSA:1.10.10.60	-	-	-	221	325	2.1E-27
SUPERFAMILY	SSF46689	Homeodomain-like	IPR009057	Homeobox-like domain superfamily	226	274	1.84E-9
CDD	cd03136	GATase1_AraC_ArgR_like	-	-	22	207	4.98396E-54
Gene3D	G3DSA:3.40.50.880	-	IPR029062	Class I glutamine amidotransferase-like	17	214	3.1E-42
SUPERFAMILY	SSF52317	Class I glutamine amidotransferase-like	IPR029062	Class I glutamine amidotransferase-like	21	205	9.93E-37
SMART	SM00342	aracneu4	IPR018060	DNA binding HTH domain, AraC-type	240	323	7.9E-22
Pfam	PF12833	Helix-turn-helix domain	IPR018060	DNA binding HTH domain, AraC-type	246	321	2.5E-21
PANTHER	PTHR43130	ARAC-FAMILY TRANSCRIPTIONAL REGULATOR	-	-	18	263	9.9E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.