Pseudomonas poae RE_1-1-14, H045_21245

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0043190 ATP-binding cassette (ABC) transporter complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0042597 periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015871 choline transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0033265 choline binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppz02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.100 - - - 108 217 5.5E-93
CDD cd13640 PBP2_ChoX IPR017783 Choline ABC transporter, substrate-binding protein 26 288 0.0
Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system IPR007210 ABC-type glycine betaine transport system, substrate-binding domain 26 275 9.2E-58
Gene3D G3DSA:3.40.190.10 - - - 27 285 5.5E-93
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 22 292 1.74E-81
NCBIfam TIGR03414 JCVI: choline ABC transporter substrate-binding protein IPR017783 Choline ABC transporter, substrate-binding protein 19 304 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.