Pseudomonas denitrificans ATCC 13867, H681_00770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pdr02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 100 | 255 | 1.6E-46 |
| Coils | Coil | Coil | - | - | 108 | 128 | - |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 105 | 259 | 1.65E-46 |
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 95 | 260 | 6.1E-51 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 85 | 261 | 3.4E-56 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 101 | 258 | 1.42714E-60 |
| NCBIfam | NF038266 | NCBIFAM: biofilm regulation diguanylate cyclase SiaD | - | - | 9 | 257 | 8.5E-116 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 97 | 258 | 1.7E-48 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 7 | 257 | 8.2E-68 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 89 | 260 | 2.2E-56 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.