Pseudomonas denitrificans ATCC 13867, H681_00840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr02010 ABC transporters 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00920 Sulfur metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 60 229 5.6E-19
PANTHER PTHR30151 ALKANE SULFONATE ABC TRANSPORTER-RELATED, MEMBRANE SUBUNIT - - 2 238 0.0
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 296 478 9.03E-25
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 347 475 2.21451E-5
FunFam G3DSA:1.10.3720.10:FF:000003 Aliphatic sulfonate ABC transporter permease - - 35 229 5.4E-59
SUPERFAMILY SSF161098 MetI-like IPR035906 MetI-like superfamily 36 220 2.35E-24
CDD cd06261 TM_PBP2 IPR000515 ABC transporter type 1, transmembrane domain MetI-like 42 214 7.83708E-7
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 32 227 3.8E-16
Pfam PF00528 Binding-protein-dependent transport system inner membrane component IPR000515 ABC transporter type 1, transmembrane domain MetI-like 320 487 1.6E-20
Gene3D G3DSA:1.10.3720.10 - IPR035906 MetI-like superfamily 297 491 9.0E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.