Pseudomonas denitrificans ATCC 13867, H681_01240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00202
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009448 gamma-aminobutyric acid metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003867 4-aminobutyrate transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00700
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008483 transaminase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00202
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pdr00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00650 Butanoate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr00310 Lysine degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pdr01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 25 129 0.002
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 60 319 0.0
CDD cd00610 OAT_like IPR005814 Aminotransferase class-III 8 422 0.0
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 22 425 0.0
FunFam G3DSA:3.90.1150.10:FF:000022 4-aminobutyrate aminotransferase - - 277 419 1.1E-37
Pfam PF00202 Aminotransferase class-III IPR005814 Aminotransferase class-III 17 421 0.0
Gene3D G3DSA:3.90.1150.10 Aspartate Aminotransferase, domain 1 IPR015422 Pyridoxal phosphate-dependent transferase, small domain 8 418 0.0
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 122 154 0.5
FunFam G3DSA:3.40.640.10:FF:000013 4-aminobutyrate aminotransferase - - 60 319 6.6E-120
PIRSF PIRSF000521 Transaminase_4ab_Lys_Orn IPR005814 Aminotransferase class-III 172 425 7.6E-41
NCBIfam TIGR00700 JCVI: 4-aminobutyrate--2-oxoglutarate transaminase IPR004632 4-aminobutyrate aminotransferase, bacterial 10 421 0.0
PANTHER PTHR11986 AMINOTRANSFERASE CLASS III - - 6 423 2.0E-108

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.