Pseudomonas denitrificans ATCC 13867, H681_19210

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0019354 siroheme biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd11642
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04051
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR04051
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008168 methyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd11642
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 33 168 4.1E-18
FunFam G3DSA:3.20.20.70:FF:000188 Mycofactocin radical SAM maturase MftC - - 22 328 2.7E-85
Pfam PF13353 4Fe-4S single cluster domain - - 34 135 1.9E-5
NCBIfam TIGR04051 JCVI: heme d1 biosynthesis radical SAM protein NirJ IPR023992 Pre-heme d1 synthase NirJ 26 376 0.0
SFLD SFLDG01067 SPASM/twitch domain containing - - 1 381 0.0
PANTHER PTHR45790 SIROHEME SYNTHASE-RELATED - - 401 637 5.6E-85
CDD cd11642 SUMT IPR006366 Uroporphyrin-III C-methyltransferase 409 634 1.28726E-110
NCBIfam TIGR01469 JCVI: uroporphyrinogen-III C-methyltransferase IPR006366 Uroporphyrin-III C-methyltransferase 404 637 1.2E-86
SUPERFAMILY SSF53790 Tetrapyrrole methylase IPR035996 Tetrapyrrole methylase superfamily 403 636 1.96E-74
FunFam G3DSA:3.40.1010.10:FF:000001 Siroheme synthase - - 401 519 6.0E-48
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 27 230 0.009
CDD cd21123 SPASM_MftC-like - - 275 369 5.23371E-24
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 27 265 1.8E-43
Gene3D G3DSA:3.30.950.10 - IPR014776 Tetrapyrrole methylase, subdomain 2 520 645 9.1E-38
Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IPR000878 Tetrapyrrole methylase 406 615 4.7E-48
SUPERFAMILY SSF102114 Radical SAM enzymes - - 28 348 6.28E-64
CDD cd01335 Radical_SAM - - 31 210 2.22438E-20
Gene3D G3DSA:3.40.1010.10 - IPR014777 Tetrapyrrole methylase, subdomain 1 399 519 1.2E-40
SFLD SFLDF00393 heme D1 biosynthesis (NirJ-like) IPR023992 Pre-heme d1 synthase NirJ 1 381 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.