Pseudomonas denitrificans ATCC 13867, H681_19985

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 347 471 1.15E-25
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 355 480 5.9E-21
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 484 635 5.3E-41
Gene3D G3DSA:3.30.450.20 PAS domain - - 359 482 6.1E-24
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 483 636 1.4E-36
SMART SM00091 pas_2 IPR000014 PAS domain 359 425 7.8E-9
Pfam PF05228 CHASE4 domain IPR007892 CHASE4 56 215 1.3E-24
Pfam PF00672 HAMP domain IPR003660 HAMP domain 308 356 5.7E-8
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 483 642 1.4E-51
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 292 642 8.8E-76
CDD cd06225 HAMP - - 310 354 1.83136E-4
SMART SM00267 duf1_3 IPR000160 GGDEF domain 473 640 1.8E-56
Gene3D G3DSA:6.10.340.10 - - - 275 358 5.8E-9
CDD cd00130 PAS IPR000014 PAS domain 368 470 2.39903E-11
Pfam PF00989 PAS fold IPR013767 PAS fold 360 470 3.9E-17
SUPERFAMILY SSF158472 HAMP domain-like - - 308 356 2.88E-5
CDD cd01949 GGDEF IPR000160 GGDEF domain 485 638 5.62906E-57
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 490 638 8.63E-43
SMART SM00304 HAMP_11 IPR003660 HAMP domain 307 359 1.9E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.