Pseudomonas aeruginosa LESB58, PALES_02331

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 6 56 2.0E-17
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 2 93 1.2E-19
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 72 256 2.2E-42
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 6 255 5.6E-56
SUPERFAMILY SSF55781 GAF domain-like - - 70 251 1.63E-38
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 76 1.07E-17
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 123 250 1.1E-17
FunFam G3DSA:1.10.10.10:FF:000056 IclR family transcriptional regulator - - 2 73 1.3E-22
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 71 4.0E-20
FunFam G3DSA:3.30.450.40:FF:000084 IclR family transcriptional regulator - - 72 256 1.9E-111

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.