Pseudomonas aeruginosa LESB58, PALES_05081 (nirJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SFLDF00393
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00729
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Energy metabolism Other LESB58 genes in this class
Biosynthesis of cofactors, prosthetic groups and carriers Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Denitrification ECO:0000037
not_recorded
PseudoCAP Biosynthesis of heme d1 ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11228 RADICAL SAM DOMAIN PROTEIN - - 25 370 9.0E-84
NCBIfam TIGR04051 JCVI: heme d1 biosynthesis radical SAM protein NirJ IPR023992 Pre-heme d1 synthase NirJ 26 378 0.0
CDD cd01335 Radical_SAM - - 31 214 4.44223E-25
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 27 230 8.1E-4
PIRSF PIRSF037420 PqqE IPR017200 Coenzyme PQQ synthesis protein E-like 13 386 0.0
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 22 248 9.8E-47
SFLD SFLDF00393 heme D1 biosynthesis (NirJ-like) IPR023992 Pre-heme d1 synthase NirJ 1 383 0.0
SFLD SFLDG01072 dehydrogenase like - - 1 383 0.0
FunFam G3DSA:3.20.20.70:FF:000188 Mycofactocin radical SAM maturase MftC - - 22 331 7.6E-101
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 33 187 2.3E-25
SUPERFAMILY SSF102114 Radical SAM enzymes - - 23 351 5.76E-68
Pfam PF13353 4Fe-4S single cluster domain - - 28 138 1.7E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.