Pseudomonas aeruginosa LESB58, PALES_39901

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other LESB58 genes in this class
Chemotaxis Other LESB58 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP Chemotactic transducer (MCP) ECO:0000037
not_recorded

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.950 - - - 227 415 1.8E-52
Pfam PF13426 PAS domain IPR000014 PAS domain 14 109 2.2E-15
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 129 237 7.5E-15
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 7 109 3.4E-26
SMART SM00086 pac_2 IPR001610 PAC motif 70 112 0.049
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 3 408 2.9E-58
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 1 111 2.7E-52
SMART SM00086 pac_2 IPR001610 PAC motif 192 234 1.4E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 8 118 2.8E-15
FunFam G3DSA:3.30.450.20:FF:000103 Methyl-accepting chemotaxis protein - - 119 233 5.8E-60
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 303 330 6.0E-19
CDD cd00130 PAS IPR000014 PAS domain 14 109 4.97193E-13
Pfam PF08447 PAS fold IPR013655 PAS fold-3 142 227 1.7E-15
SMART SM00091 pas_2 IPR000014 PAS domain 117 186 9.5
CDD cd00130 PAS IPR000014 PAS domain 129 231 5.32018E-12
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 129 231 3.49E-25
CDD cd11386 MCP_signal - - 242 414 5.76349E-54
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 252 413 4.6E-41
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 225 412 9.29E-57
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 104 7.6E-23
SMART SM00091 pas_2 IPR000014 PAS domain 3 65 2.3
Gene3D G3DSA:3.30.450.20 PAS domain - - 105 226 1.8E-21
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 332 361 6.0E-19
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 223 417 3.0E-24

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.