Pseudomonas aeruginosa LESB58, PALES_59321

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0070063	RNA polymerase binding	ISS Inferred from Sequence or Structural Similarity Term mapped from: PseudoCAP:PA5536	ECO:0000249 sequence similarity evidence used in automatic assertion	23416301
Molecular Function	GO:0008270	zinc ion binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00926	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other LESB58 genes in this class Adaptation, Protection Other LESB58 genes in this class Two-component regulatory systems Other LESB58 genes in this class

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil	Coil	-	-	71	91	-
Gene3D	G3DSA:1.20.120.910	-	-	-	1	134	6.6E-42
Pfam	PF01258	Prokaryotic dksA/traR C4-type zinc finger	IPR000962	Zinc finger, DksA/TraR C4-type	91	126	4.7E-11
Hamap	MF_00926	RNA polymerase-binding transcription factor DksA [dksA].	IPR012784	RNA polymerase-binding transcription factor DksA	11	132	27.460869
SUPERFAMILY	SSF109635	DnaK suppressor protein DksA, alpha-hairpin domain	IPR037187	DksA, N-terminal domain superfamily	1	92	3.92E-24
NCBIfam	TIGR02420	JCVI: RNA polymerase-binding protein DksA	IPR012784	RNA polymerase-binding transcription factor DksA	15	123	1.5E-39
FunFam	G3DSA:1.20.120.910:FF:000005	RNA polymerase-binding transcription factor DksA	-	-	1	134	1.0E-88
SUPERFAMILY	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	-	-	93	131	2.71E-9
PANTHER	PTHR33823	RNA POLYMERASE-BINDING TRANSCRIPTION FACTOR DKSA-RELATED	-	-	15	130	4.7E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.