Pseudomonas mendocina NK-01, MDS_1523

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02939
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF88946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.1740.10:FF:000001 RNA polymerase sigma factor - - 1 121 3.6E-66
CDD cd06171 Sigma70_r4 - - 132 182 1.74733E-13
NCBIfam TIGR02939 JCVI: RNA polymerase sigma factor RpoE IPR014286 RNA polymerase sigma-70 RpoE type 3 190 1.5E-96
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 21 185 9.1E-30
Pfam PF08281 Sigma-70, region 4 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 132 181 7.9E-18
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 126 189 2.0E-23
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 1 107 1.44E-32
Gene3D G3DSA:1.10.1740.10 - - - 1 121 2.8E-35
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 123 186 1.87E-17
PANTHER PTHR43133 RNA POLYMERASE ECF-TYPE SIGMA FACTO IPR039425 RNA polymerase sigma-70 like 3 189 1.3E-47
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 25 92 1.1E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.