Pseudomonas syringae pv. tomato DC3000, PSPTO_5038

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006364	rRNA processing	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00651	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006139	nucleobase-containing compound metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.420.140	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SMART	SM00732	rnase_8s	IPR006641	YqgF/RNase H-like domain	5	105	3.0E-38
CDD	cd16964	YqgF	IPR005227	Putative pre-16S rRNA nuclease	7	139	3.33953E-58
NCBIfam	TIGR00250	JCVI: Holliday junction resolvase RuvX	IPR005227	Putative pre-16S rRNA nuclease	8	138	5.0E-41
Gene3D	G3DSA:3.30.420.140	-	IPR037027	YqgF/RNase H-like domain superfamily	5	143	7.1E-42
SUPERFAMILY	SSF53098	Ribonuclease H-like	IPR012337	Ribonuclease H-like superfamily	6	140	1.97E-39
PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	IPR005227	Putative pre-16S rRNA nuclease	6	140	2.1E-25
Hamap	MF_00651	Putative pre-16S rRNA nuclease [yqgF].	IPR005227	Putative pre-16S rRNA nuclease	5	141	24.469021
Pfam	PF03652	Holliday junction resolvase	IPR005227	Putative pre-16S rRNA nuclease	7	139	1.1E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.