Pseudomonas syringae pv. tomato DC3000, PSPTO_5038

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5038
NCBI Old Locus Tag	PSPTO5038
Name	Synonym: PSPTO5038
Replicon	chromosome
Genomic location	5739664 - 5740104 (+ strand)

Cross-References

RefSeq	NP_794771.1
GI	28872152
Entrez	1186723
INSDC	AAO58466.1
NCBI Locus Tag	PSPTO_5038
NCBI Old Locus Tag	PSPTO5038
UniParc	UPI0000009523
UniProtKB Acc	Q87VA1
UniProtKB ID	RUVX_PSESM
UniRef100	UniRef100_Q87VA1
UniRef50	UniRef50_Q87VA1
UniRef90	UniRef90_Q87VA1

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.56
Kyte-Doolittle Hydrophobicity Value	-0.251
Molecular Weight (kDa)	15.9
Isoelectric Point (pI)	6.53

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 501 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000395 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5038

Human Homologs

References