Pseudomonas protegens Pf-5, PFL_5948

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5948
Name
Replicon chromosome
Genomic location 6761781 - 6762701 (+ strand)

Cross-References

RefSeq YP_263006.1
GI 70733233
Entrez 3480320
INSDC AAY95138.1
NCBI Locus Tag PFL_5948
UniParc UPI000054E1F7
UniProtKB Acc Q4K427
UniProtKB ID Q4K427_PSEF5
UniRef100 UniRef100_Q4K427
UniRef50 UniRef50_P0DKS0
UniRef90 UniRef90_V9R476

Product

Feature Type CDS
Coding Frame 1
Product Name
HflC/HflK family protein
Synonyms
Evidence for Translation
Charge (pH 7) -2.78
Kyte-Doolittle Hydrophobicity Value 0.107
Molecular Weight (kDa) 33.3
Isoelectric Point (pI) 5.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 571 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000443 (485 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5948

Human Homologs

Ensembl 110, assembly GRCh38.p14
stomatin like 2 [Source:HGNC Symbol;Acc:HGNC:14559]
E-value: 2.7e-32
Percent Identity: 40.9

References

No references are associated with this feature.