Pseudomonas putida BIRD-1, PPUBIRD1_3223

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida BIRD-1
GCF_000183645.1|latest
Locus Tag
PPUBIRD1_3223
Name
Replicon chromosome
Genomic location 3606718 - 3608271 (- strand)

Cross-References

RefSeq YP_005931027.1
GI 386012750
EC Number 3.6.3.17
Entrez 12521392
NCBI Locus Tag PPUBIRD1_3223

Product

Feature Type CDS
Coding Frame 1
Product Name
ABC transporter
Synonyms
Evidence for Translation
Charge (pH 7) -1.20
Kyte-Doolittle Hydrophobicity Value 0.053
Molecular Weight (kDa) 55632.6
Isoelectric Point (pI) 6.73

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000134 (929 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPUBIRD1_3223
Search term: ABC transporter

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
E-value: 1.2e-12
Percent Identity: 26.1

Human Homologs

Ensembl 97, assembly GRCh38.p12
ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
E-value: 1.2e-12
Percent Identity: 26.1

References

No references are associated with this feature.